2010 Spring BME 211-01

Bulletin Course Description
Advanced topics on the electrophysiological behavior of nerve and striated muscle. Source-field models for single-fiber and fiber bundles lying in a volume conductor. Forward and inverse models for EMG and ENG. Bidomain model. Model and simulation for stimulation of single-fiber and fiber bundle. Laboratory exercises based on computer simulation, with emphasis on quantitative behavior and design. Readings from original literature. Instructor: Barr or Neu
(Instructor named in bulletin description above may not be current. For current instructor, see listing below.)

Title THEORETICAL ELECTROPHYS
Department BME
Course Number2010 Spring 211
Section Number 01
Primary Instructor Barr,Roger C
Prerequisites Prerequisite: Biomedical Engineering 101L or 201L or equivalent.
Course Homepage aiki.bme.duke.edu/wanda/bme211.html


Synopsis of course content
TOPICS:

Part I: Potentials, Fields, and Currents in Conductive Tissues

1. Boundary value problems for conductive regions.
* Homogeneous versus inhomogeneous regions.
* Isotropic versus anisotropic regions.

2. Analytical solutions by separation of variables.
* Inhomogeneity and anisotropy.
* Anisotropy tensor when principal axes are not aligned with the
coordinate system.

3. Numerical solutions using a finite element package.

4. Measurement of conductivity in isotropic and anisotropic tissues:
Four-electrode resistivity technique.

Part II: Problems Involving Transmembrane Potential

1. Macroscopic vs. cellular-level view of tissues: Setting up
boundary value problems involving membranes.

2. Continuum models: core-conductor and bidomain.
* Connection between a BVP for a single fiber and the core-conductor model.
* Analytical solutions to passive core-conductor and bidomain models.
* Bidomain with unequal anisotropy ratios ("dogbone").

3. Discrete models:
* Tissues with unconnected cells.
* Tissues with connected cells.

Part III: Bioelectric Engineering

1. Tissue stimulation.
* Intracellular vs. extracellular stimulation. Activating Function.
* Stimulation waveforms (monophasic vs. biphasic).
* Strenght-duration relationship.
* Recruitment.

2. Extracellular recordings.
* Source-field models for single fiber and fiber bundles lying in
a volume conductor.
* Forward and inverse problems.

3. Electrodes: Impedance, current density, electrochemistry.

4. Tissue damage
Textbooks
None. Readings from original articles.
Assignments
Homeworks and computer labs.
Exams
None
Term Papers
Each student will prepare and conduct a seminar based on individual readings from the literature.
Grade to be based on
Participation in class, seminar, homeworks, and computer labs.



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